##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index5_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20800647	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.9405924248414	33.0	31.0	34.0	30.0	34.0
2	32.03810439165667	34.0	31.0	34.0	30.0	34.0
3	32.086322074500856	34.0	31.0	34.0	30.0	34.0
4	35.54306354028314	37.0	35.0	37.0	33.0	37.0
5	35.543219112367034	37.0	35.0	37.0	33.0	37.0
6	35.54628666117934	37.0	35.0	37.0	33.0	37.0
7	35.45820608368576	37.0	35.0	37.0	33.0	37.0
8	35.45845521055186	37.0	35.0	37.0	33.0	37.0
9	36.986625223725014	39.0	37.0	39.0	33.0	39.0
10-14	37.38401812212861	39.2	37.2	39.4	33.2	39.4
15-19	38.44671671991741	40.0	38.0	41.0	33.6	41.0
20-24	38.269202001264674	40.0	38.0	41.0	33.4	41.0
25-29	38.181555939101315	40.0	38.0	41.0	33.0	41.0
30-34	38.08302567703783	40.0	38.0	41.0	33.0	41.0
35-39	37.86367788463503	40.0	37.2	41.0	32.8	41.0
40-44	37.49877434100968	39.8	36.6	41.0	31.6	41.0
45-49	37.08453538969245	39.0	35.6	41.0	31.0	41.0
50-54	36.27887854642214	38.2	34.8	40.0	29.8	40.6
55-59	36.1614905440201	38.0	34.8	40.0	29.6	41.0
60-64	35.64991528388516	37.2	34.0	40.0	29.0	41.0
65-69	35.15838797706629	36.2	34.0	39.4	29.0	41.0
70-74	34.35062523776303	35.0	34.0	38.2	28.8	40.4
75-79	33.474431030919376	35.0	33.0	36.6	27.6	39.0
80-84	32.64717813825695	35.0	33.0	35.6	26.6	37.4
85-89	31.800405852760253	35.0	32.4	35.0	25.2	36.2
90	31.306459073124024	35.0	32.0	35.0	24.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	151.0
11	1595.0
12	5045.0
13	9882.0
14	15745.0
15	21863.0
16	28066.0
17	33868.0
18	38948.0
19	45821.0
20	54589.0
21	65106.0
22	77305.0
23	93882.0
24	115178.0
25	142514.0
26	176889.0
27	220636.0
28	271388.0
29	330929.0
30	408678.0
31	511380.0
32	651304.0
33	847182.0
34	1155216.0
35	1661643.0
36	2573836.0
37	3874555.0
38	4505951.0
39	2774164.0
40	87338.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.338370086894233	12.174001973350082	11.084088407588068	52.40353953216762
2	21.777558169705376	18.852022090045146	35.18250932524563	24.187910415003845
3	25.77214784652237	21.11072675787168	22.522568432085464	30.594556963520485
4	27.711838035599694	26.815849141439013	19.19795918436236	26.274353638598924
5	29.329470394989897	29.535355169310996	21.6028241024679	19.532350333231214
6	24.64617168563455	32.54191339796012	21.615734540525366	21.196180375879965
7	21.567214108727583	19.024754336222365	37.2561225745481	22.151908980501947
8	21.636189233875843	22.437426404097643	28.999700086080065	26.926684275946442
9	21.659360294366724	21.255045502339456	31.41660903212078	25.668985171173038
10-14	24.465640923206305	26.299662468576614	24.694739942061798	24.539956666155284
15-19	24.80862737408112	25.2252564388901	25.1586196379474	24.807496549081385
20-24	24.586549075591936	25.46355002760738	25.521858552582927	24.428042344217754
25-29	24.416714304412853	25.487154467953772	25.471367450962617	24.624763776670758
30-34	24.445787409110096	25.447650267770005	25.40586611773707	24.700696205382826
35-39	24.456700102649048	25.57725486386806	25.38862823387221	24.577416799610678
40-44	24.403478827931384	25.436023762994104	25.5289608269237	24.631536582150815
45-49	24.36106007599331	25.47814600644884	25.447845960408806	24.712947957149048
50-54	24.388080157620813	25.569777594590192	25.48326511589426	24.558877131894736
55-59	24.39304948066166	25.504934994809105	25.454824602231575	24.64719092229767
60-64	24.298822338842747	25.536874797922763	25.568344587794744	24.595958275439745
65-69	24.32323518616249	25.646540027893767	25.540491251379795	24.48973353456395
70-74	24.368843449191484	25.573021711673043	25.48322049047797	24.5749143486575
75-79	24.358437959848008	25.527951018851226	25.540547757060427	24.57306326424034
80-84	24.305238366914896	25.66120670472411	25.55834287327149	24.475212055089507
85-89	24.396277598950554	25.621983642765805	25.4834407017809	24.498298056502733
90	24.138139754852634	25.750338497937907	25.67317495849395	24.438346788715506
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.74190961906186
2	45.96546858470922
3	56.366704810042854
4	53.98619167419862
5	48.861820728221105
6	45.84235206151451
7	43.719123089229534
8	48.56287350982229
9	47.32834546553976
10-14	49.005597589361585
15-19	49.616123923162505
20-24	49.0145914198097
25-29	49.04147808108361
30-34	49.14648361449292
35-39	49.034116902259726
40-44	49.0350154100822
45-49	49.074008033142356
50-54	48.94695728951555
55-59	49.04024040295933
60-64	48.89478061428249
65-69	48.81296872072644
70-74	48.94375779784899
75-79	48.93150122408835
80-84	48.7804504220044
85-89	48.894575655453295
90	48.576486543568144
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	13.0
1	11.0
2	10.0
3	18.0
4	35.5
5	47.0
6	54.0
7	76.5
8	100.0
9	126.5
10	146.0
11	189.5
12	280.0
13	386.0
14	550.5
15	805.5
16	1279.5
17	2110.0
18	3340.0
19	5594.0
20	7124.0
21	9345.5
22	15128.0
23	23685.0
24	35366.5
25	51947.0
26	75078.5
27	104828.5
28	139605.0
29	179799.0
30	201730.0
31	224780.0
32	271890.5
33	323711.0
34	379923.5
35	433860.0
36	487815.0
37	545508.5
38	594516.5
39	633818.0
40	653334.0
41	666763.0
42	693277.0
43	715513.5
44	727638.5
45	731661.0
46	727929.5
47	720009.5
48	716564.5
49	714939.0
50	713619.0
51	705767.0
52	696409.5
53	684881.5
54	676887.5
55	675237.0
56	664375.0
57	649307.5
58	628084.5
59	601365.0
60	587984.0
61	571844.5
62	537139.0
63	495088.0
64	445247.0
65	393690.0
66	339375.0
67	282073.0
68	229718.0
69	180394.0
70	155237.0
71	134013.5
72	95350.5
73	64725.5
74	40991.0
75	23472.5
76	12735.0
77	6574.0
78	3038.5
79	1359.0
80	822.0
81	610.5
82	326.0
83	199.0
84	123.0
85	84.5
86	58.5
87	44.5
88	33.0
89	29.0
90	32.0
91	21.5
92	11.5
93	11.5
94	10.0
95	6.5
96	5.0
97	4.0
98	2.5
99	2.0
100	1.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.29468314134651674
2	0.22356035367553712
3	0.2823566016960915
4	0.305028973377607
5	0.26004479572197925
6	0.17300423395483802
7	0.22144022731600607
8	0.24691539642973606
9	0.22959862738884998
10-14	0.20413403486920384
15-19	0.17809638325192478
20-24	0.20571667794756576
25-29	0.0365940540214927
30-34	0.004297943232246574
35-39	0.004994075424673088
40-44	0.00988334641706097
45-49	0.012782294704582987
50-54	0.007531496496238795
55-59	0.004661393465309036
60-64	0.010997734830075236
65-69	0.005583480167708245
70-74	1.8749416784968277E-4
75-79	1.1634253492211083E-4
80-84	0.0034700843680487443
85-89	0.0014855307145013325
90	0.0032114385672714894
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.0800647E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	50.790030555273084
#Duplication Level	Relative count
1	100.0
2	29.329685900968276
3	14.690427458080768
4	9.02149098638117
5	6.021215460914744
6	4.611115484531213
7	3.398803432260096
8	2.793631425647485
9	2.2415964732740297
10++	24.695937967409275
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4349360	2.6089141	5.4404087	1
CCTGG	4327985	2.5819216	6.2586336	1
CTTCT	4574195	2.5148563	5.6333556	1
CTGGA	4195760	2.464382	8.906165	1
TCCAG	4122550	2.373947	5.85434	2
CTGCT	4073645	2.3329804	5.1752706	1
CTCCT	4092650	2.297948	7.7422256	1
CTGGG	3765055	2.2909784	8.727061	1
CAGGA	3795950	2.2417905	5.547019	1
CCCAG	3737380	2.1979074	7.4998045	1
CTTCA	3957480	2.1877334	5.8196106	1
CTCCA	3871015	2.1854334	8.274504	1
CAGAA	3716680	2.1187391	5.0018067	1
CTCTG	3605720	2.0649993	6.4861183	1
CTGCA	3472915	1.9998581	5.0088606	1
CTGGC	3150480	1.879464	5.4945264	1
TGGAA	3240040	1.8736475	5.1409674	2
CTGAA	3286395	1.8632236	5.5726466	1
CTCAG	3052500	1.7577646	6.2102623	1
CTTTG	3042545	1.706192	5.084444	1
CTGGT	2860135	1.670732	5.1324143	1
CTTGG	2803560	1.6376839	5.4304852	1
CTCCC	2733555	1.5674742	5.1842365	1
>>END_MODULE
